Scientific Data Software Engineer - Relocation to UK
Python
Scientific Data Software Engineer - Relocation to UK
Type of work
Undetermined
Experience
Junior
Employment Type
B2B
Operating mode
Office
Tech stack
Python
Unix
PostgreSQL
Elasticsearch
Docker
Kubernetes
Job description
Online interview
A unique and exciting opportunity has been created for a scientific software engineer to work on the development of the ChEBI database (https://www.ebi.ac.uk/chebi/), which contains detailed information on small molecule compounds in biology. ChEBI is a very widely used resource, with a growing user base numbered in the hundreds of thousands and with millions of accesses every year. This "new ChEBI" will be developed using modern software technologies, making it easier to support, and will be more flexible, efficient and sustainable.
The successful candidate will be based in the Chemical Biology Team at the European Bioinformatics Institute (EMBL-EBI) and will closely with other members of the team, together with other groups at EMBL-EBI and collaborators as required. You will be responsible for the implementation of a new database schema and its data import and integration pipelines, a new searching infrastructure, a facility to enable users to submit new entries in bulk and visualisation of the ChEBI ontology which is a unique feature of the database. In addition to having relevant software engineering and programming skills you will need to have excellent attention to detail, good communication skills and be able to interact not only with other software engineers but also with ChEBI’s many users.
The successful candidate will be based in the Chemical Biology Team at the European Bioinformatics Institute (EMBL-EBI) and will closely with other members of the team, together with other groups at EMBL-EBI and collaborators as required. You will be responsible for the implementation of a new database schema and its data import and integration pipelines, a new searching infrastructure, a facility to enable users to submit new entries in bulk and visualisation of the ChEBI ontology which is a unique feature of the database. In addition to having relevant software engineering and programming skills you will need to have excellent attention to detail, good communication skills and be able to interact not only with other software engineers but also with ChEBI’s many users.
You will have the opportunity to contribute to a widely-used software resource, including:
- Develop key elements of the “new ChEBI” database and resource including a new database schema, data import and integration pipelines, a new searching infrastructure, a mechanism to enable the bulk submission of new entries and visualisation of the ChEBI ontology
- Interact with key users of ChEBI at EMBL-EBI and our global collaborators to actively solicit feedback as the project progresses
- Be an active member of the chemical biology team of software engineers, curators and scientists
- Interact with the wider ChEBI user community, for example at events such as workshops and conferences
- Contribute to the broader goals of the team and EMBL-EBI in developing resources for the scientific community
Why join us
Do something meaningful
At EMBL-EBI you can apply your talent and passion to accelerate science and tackle some of humankind's greatest challenges. EMBL-EBI, part of the European Molecular Biology Laboratory, is a worldwide leader in the storage, analysis and dissemination of large biological datasets. We provide the global research community with access to publicly available databases and tools which are crucial for the advancement of healthcare, food security, and biodiversity.
At EMBL-EBI you can apply your talent and passion to accelerate science and tackle some of humankind's greatest challenges. EMBL-EBI, part of the European Molecular Biology Laboratory, is a worldwide leader in the storage, analysis and dissemination of large biological datasets. We provide the global research community with access to publicly available databases and tools which are crucial for the advancement of healthcare, food security, and biodiversity.
Join a culture of innovation
We are located on the Wellcome Genome Campus, alongside other prominent research and biotech organisations, and surrounded by beautiful Cambridgeshire countryside. This is a highly collaborative and inclusive community where our employees enjoy a relaxed atmosphere. We are committed to ensuring our employees feel valued, supported and empowered to reach their professional potential.
We are located on the Wellcome Genome Campus, alongside other prominent research and biotech organisations, and surrounded by beautiful Cambridgeshire countryside. This is a highly collaborative and inclusive community where our employees enjoy a relaxed atmosphere. We are committed to ensuring our employees feel valued, supported and empowered to reach their professional potential.
Enjoy lots of benefits:
- Financial incentives: Monthly family, child and non-resident allowances, annual salary review, pension scheme including 17% employer contribution, death benefit, long-term care, accident-at-work and unemployment insurances
- Flexible working arrangements
- Private medical insurance for you and your immediate family (including all prescriptions and generous dental & optical cover)
- Generous time off: 30 days annual leave per year, in addition to eight bank holidays
- Relocation package including installation grant (if applicable)
- Campus life: Free shuttle bus to and from work, on-site library, subsidised on-site gym and cafeteria, casual dress code, extensive sports and social club activities (on campus and remotely)
- Family benefits: On-site nursery, 10 days of child sick leave, generous parental leave, holiday clubs on campus and monthly family and child allowances
- Benefits for non-UK residents: Visa exemption, education grant for private schooling, financial support to travel back to your home country every second year and a monthly non-resident allowance.
For more details please see our employee benefits page.
What else you need to know
- Contract duration: This position is a 3 year fixed-term contract.
- International applicants: We recruit internationally and successful candidates are offered visa exemptions. Read more on our page for international applicants.
- Diversity and inclusion: At EMBL-EBI, we strongly believe that inclusive and diverse teams benefit from higher levels of innovation and creative thought. We encourage applications from women, LGBTQ+ and individuals from all nationalities.
- Job location: This role is based in Hinxton, UK and you will be required to relocate once it is safe to do so, if you are currently based abroad. Read more about how we are recruiting during the pandemic.
- How to apply: To apply please submit a cover letter and a CV through our online system. We aim to provide a response within two weeks after the closing date: 11 Oct 2021.
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